PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G059100.1
Common NameB456_007G059100, LOC105802260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 211aa    MW: 24069.2 Da    PI: 11.1718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G059100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66e-104994454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +h+ +Er RR+ri   f+ Lr++lP++      K++Ka++L ++v+ +++L
  Gorai.007G059100.1 49 KHKTAERHRRKRISRQFDMLRTILPNL-----IKMDKASVLGETVRQVREL 94
                        69************************9.....6************988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9734594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-74899No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1249105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-1249104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-74994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1051100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.7E-4134182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVRLKQLEQD IQQHLRRYRA SISTIDFSFK SLKKVTKPKA EANIANALKH KTAERHRRKR  60
ISRQFDMLRT ILPNLIKMDK ASVLGETVRQ VRELKNRVKE MKGASDGSLE CVLPGELNSL  120
SFGFSEKDGN LVKATFSCDD RPELIADLTR EIRKVSGTVV RAEMVFIGGR NKSVLWIKGF  180
SGNERMGMLK RALKMAIDIP KKNWNPRFNI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489249.11e-154PREDICTED: transcription factor bHLH131-like
TrEMBLA0A0D2S7N71e-154A0A0D2S7N7_G
STRINGPOPTR_0007s14360.16e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.19e-32bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]